Statistics for IBG Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads ...

Illinois Bio Grid DePaul Bioinformatics Group Publications The following documents have been published as part of the research associated with the Illinois Bio ...

Illinois Bio Grid Developed Software IBG !GeneDesigner IBG GeneDesigner is an open source product available for free download. It is still in development, but it ...

Digital Lab Notebook Overview The IBG Digital Lab Notebook is a collaborative project with the Field Museum creating a web based record keeping and project management ...

How to create an account 1. log on to z login.cti.depaul.edu with ssh 1. execute htpasswd2 n $USER to create a hash value of your password 1. Copy the ...

Illinois Bio Grid DePaul Bioinformatics Group List of Meetings in Proteomics Journal PAPER CALLS, CONFERENCES, and TALKS Archived Paper calls are available ...

" warn "off"}% Site Map Web Home About the IBG News Research Areas Publications IBG Software GeneDesigner ...

Illinois Bio Grid DePaul Bioinformatics Group People Primary Investigator Dave Angulo Students Below is a list of the students working on this project. What ...

PAPER CALLS ARCHIVED Please click on the header to sort. Paper Call Listings Name of Conference Location and Date of Conference URL Paper ...

Installation Decisions of Meeting on 11/22/05 OS: Debian latest stable (in favor of Red Hat because we are familiar with it and it has good maintenance features with ...

How to Setup a Project for Nightly Build Nightly build is also known as continuous integration or automated build. The nightly build application that is employed for ...

Systems Administration This page is a compilation of systems administration procedures and short cuts. Machines which have a specific item not available on the other ...

Illinois Bio Grid DePaul Bioinformatics Group IBG Tutorial (Training Guide) This document is a proposal for student training in the technologies required to perform ...

Random Walk Framework Intra Chain Electron Transfer in Polypeptides DaveAngulo 10 Sep 2007 length 5 distribution.xls: Site frequency distribution, cubic lattice ...

About the Illinois Bio Grid Click here for a 32 Mb avi file Mission Statement The Illinois Bio Grid is a consortium ...

Random Walk Framework Intra Chain Energy Transfer in Polypeptides DaveAngulo 10 Sep 2007

Illinois Bio Grid Random Walk Framework Particles suspended in solution undergo random movement in time and space (taken as continuum variables) that is often referred ...

Illinois Bio Grid Wiki Click here for a 32 Mb avi file Welcome Welcome to the wiki home of the Illinois Bio Grid ...

Grid Environment Placeholder to keep track of information about Globus install on z cluster and IBG Hardware Installation Notes RJV 10.26.06: ...

Illinois Bio Grid DePaul Bioinformatics Group IBG Reading List This page is a list of papers, books, and other material that are useful for computer scientists ...

Illinois Bio Grid DePaul Bioinformatics Group IBG Notification Subscriptions This is a subscription service to be automatically notified by e mail when topics ...

IBG Maldi Quantifier User Documentation The IBG Maldi Quantifier tool is for quantifying the degree of modification in Maldi mass spectra. It was developed around ...

IBG Services These are the services on our web sites that IBG performs using our computational resources without charge. IBG Web Prot Id To see what this web service ...

OpenConf can be found here: http://www.zakongroup.com/technology/openconf.shtml OpenConf documentation can be found here: http://www.zakongroup.com/technology ...

MySQL can be found here: http://mysql.com MySQL documentation can be found here: http://dev.mysql.com/doc/

ToriHuang 11 Dec 2006

MariellenDwyer 03 Dec 2006

Sunfire Storage Array Configuration Overview The Sunfire 68K which comprises titan and myosin is connected to a Sun enterprise !StorEdge T3 storage array cabinet ...

Illinois Bio Grid Projects For an overview of our current research investigations, please see Research Areas. Possible future Bio Grid projects are listed on the ideas ...

R and PARAFAC R If you want to get ANYWHERE using this package, I ( GeorgeSteinhardt) would STROGNLY suggest searching this site: http://tolstoy.newcastle.edu.au ...

Histone Subversion not responding Issue Subversion fails to respond on the web. Observations Numerous apache processes are running and has exceeded the number ...

Illinois Bio Grid Hardware Z Cluster The z cluster is an high performance Linux cluster installed at the School of Computer Science, Telecommunications and Information ...

PatrickSmyth 24 Sep 2006 The following code scheme was articulated in order to implement a MVC architecture into the R code associated with the Pelagic application ...

PatrickSmyth 24 Sep 2006 The following code example was presented at the BioInformatics weekly research meeting held on September 18, 2006 as an example of a coding ...

EricPuryear 03 Aug 2006 Compute nodes won't boot without a keyboard or KVM switch plugged in. After total power loss, nodes may not NFS mount the /maxtor300gb ...

This is how to get accounts for the various resources of the Illinois !BioGrid Subversion Follow SubversionAccount gridweb.cti.depaul.edu Ask EricPuryear histone ...

IBG Workbench Project Description This project entails developing solutions for anaylsis of Mass Spectrometry data. This includes analysis tools such as !SpectralMatch ...

GeneDesigner Overview The IBG !GeneDesigner is a component of the IBG Protein Desktop application which can be used to generate a DNA sequence from a given protein ...

Mass Spectrometry Desktop Visualization Annotation Project Team members Marc Peters Gil Kwak Mariellen Dwyer Ben Cheung Mike Boyle Tracks ...

Project Description Project Members Dave Angulo Dominic Battre Hussam Ala Eldeen Eric Puryear Jennifer Von Puymbrouck Rob Vogelbacher ...

Timeline Milestones kdrew: I've updated some of the dates to reflect the actual start date 1. Design and prototype replicate analysis, averaging of modes, should ...

LaurieParker 16 Feb 2006 Maldi PTM Quantifier Tool for quantifying degree of modification in Maldi mass spectra, designed around phosphorylation and thiophosphorylation ...

Illinois Bio Grid DePaul Bioinformatics Group Research Areas Genomics Genomics is the field of investigating proteins based on their primary structure (DNA nucleic ...

KevinDrew 10 Jan 2006 Maldi PTM Filter Modification detection/quantification in samples with unknown modified and unmodified peptides Workflow: 1. MS run on ...

Illinois Bio Grid System Topology The following diagrams describe the current computational environment of the IBG Z Cluster (kdrew: this graphic is outdated ...

Name: Brian Jurries UserName: BrianJurries Email: Brian.Jurries@gmail.com Cell: 806 239 7439 BrianJurries 26 Jan 2006

by: Kevin Drew This algorithm takes in a Sequence and a !SeqTag and returns a list of possible sub sequences A Sequence might look something like this: A B C D E F ...

This page is for documentation on the ScoreSequenceDerivedSpectrumAgainstExperimentalSpectrum. KevinDrew 20 Jan 2005 ScoreSequenceDerivedSpectrumAgainstExperimentalSpectrum ...